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Publications

List of publications on:

Google Scholar ● ORCID ● WoS

 

Selected journal papers:

S Khalafi, N Ghadiri, and M Moradi, 2023. A hybrid deep learning approach for phenotype prediction from clinical notes. Journal of Ambient Intelligence and Humanized Computing PDF
H Memarzadeh, N Ghadiri, M Samwald, and ML Shahreza, 2022. A Study into patient similarity through representation learning from medical records. Knowledge and Information Systems PDF
S Sharifi, ML Shahreza, A Pakdel, JM Reecy, N Ghadiri, H Atashi, M Motamedi, and E Ebrahimie, 2021. Systems Biology–Derived Genetic Signatures of Mastitis in Dairy Cattle: A New Avenue for Drug Repurposing. Animals, 12(1), p.29.Link
E Davoodijam, N Ghadiri, ML Shahreza and F Rinaldi. (2021). MultiGBS: A multi-layer graph approach to biomedical summarization. Journal of Biomedical Informatics, 116, 103706 Link PDF
MK Nahari, N Ghadiri, A Baraani-Dastjerdi and JR Sack. A novel similarity measure for spatial entity resolution based on data granularity model: Managing inconsistencies in place descriptions. Appl Intell (2021). Link
M Joodaki, N Ghadiri, Z Maleki and ML Shahreza. (2021). A scalable random walk with restart on heterogeneous networks with Apache Spark for ranking disease-related genes through type-II fuzzy data fusion. Journal of Biomedical Informatics, 115, 103688. Link
EF Maleki, N Ghadiri, ML Shahreza, and Z Maleki. "DHLP 1&2: Giraph based distributed label propagation algorithms on heterogeneous drug-related networks." Expert Systems with Applications 159 (2020): 113640. Link PDF
ML Shahreza,  N Ghadiri, and JR Green. "A computational drug repositioning method applied to rare diseases: Adrenocortical carcinoma." Scientific reports 10.1 (2020): 1-7. PDF
Z. Mannani, I. Izadi, N Ghadiri, Preprocessing of alarm data for data mining. Industrial & Engineering Chemistry Research,  2019 https://doi.org/10.1021/acs.iecr.8b05955
MN Azadani, N Ghadiri, E Davoodijam, Graph-based biomedical text summarization: An itemset mining and sentence clustering approach,  Journal of Biomedical Informatics, 2018 https://doi.org/10.1016/j.jbi.2018.06.005
ML Shahreza,  N Ghadiri,  SR Mousavi,  J Varshosaz, and JR Green, A review of network-based approaches to drug repositioning, Briefings in Bioinformatics (IF=8.4) Link

ML Shahreza,  N Ghadiri,  SR Mousavi,  J Varshosaz, and JR Green, Heter-LP: A heterogeneous label propagation algorithm and its application in drug repositioning Journal of Biomedical Informatics, 2017 (IF=2.4) http://dx.doi.org/10.1016/j.jbi.2017.03.006
N Ghadiri, M Ghaffari, MA Nikbakht, BigFCM: Fast, Precise and Scalable FCM on Hadoop, Future Generation Computer Systems, 2017, https://doi.org/10.1016/j.future.2017.06.010  , PDF 

A Mehranfar, N Ghadiri, M Kouhsar, A Golshani; A type-2 fuzzy data fusion approach for building reliable weighted protein interaction networks with application in protein complex detection; Computers in Biology and Medicine; https://doi.org/10.1016/j.compbiomed.2017.06.019
M Moradi, N Ghadiri, Quantifying the informativeness for biomedical literature summarization: An itemset mining method, Computer Methods and Programs in Biomedicine, Volume 146, July 2017, Pages 77-89,  https://doi.org/10.1016/j.cmpb.2017.05.011, PDF

M Ghaffari, N Ghadiri, MH Manshaei, M Sadeghi Lahijani; P^4QS: A Peer to Peer Privacy Preserving Query Service for Location-Based Mobile Applications; IEEE Transactions on Vehicular Technology, 2017, https://doi.org/10.1109/TVT.2017.2703631
M Moradi, N Ghadiri, A Bayesian Approach to Biomedical Text Summarization,  PDF, 2016
B. Saberi, N. Ghadiri, A Sample-Based Approach to Data Quality Assessment in Spatial Databases with Application to Mobile Trajectory Nearest-Neighbor Search, Journal of Computing and Security, PDF, Vol.1, No.3, pp.239-249, July 2014
S.M. Ghaffari, N. Ghadiri, Ambiguity-Driven Fuzzy C-Means Clustering: How to Detect Uncertain Clustered Records, Applied Intelligence, http://dx.doi.org/10.1007/s10489-016-0759-1 , PDF, 2016. 
A. Beiranvand, N. Ghadiri, Adaptive Processing of Federated Queries over Linked Data based on Tuple Routing, PDF, Submitted.
S. R. Mousavi, I. Khodadadi, H. Falsafain, R. Nadimi, N. Ghadiri, Maximum Likelihood Model Based on Minor Allele Frequencies and Weighted Max-SAT formulation for Haplotype Assembly, Journal of Theoretical Biology 350 (2014), 49-56. http://www.sciencedirect.com/science/article/pii/S0022519314000551

N. Ghadiri, A. Baraani-Dastjerdi, N. Ghasem-Aghaee, and M.A. Nematbakhsh, Optimizing the Performance and Robustness of Type-2 Fuzzy Group Nearest-Neighbor Queries, Mobile Information Systems 7 (2011), 123-145. http://dx.doi.org/10.3233/MIS-2011-0114

N. Ghadiri, A. Baraani-Dastjerdi, N. Ghasem-Aghaee, and M.A. Nematbakhsh, GREST – A Type-2 Fuzzy Distance Model for Group Nearest-Neighbor Queries, Journal of Intelligent and Fuzzy Systems 5-6 (2011), 217-236. http://dx.doi.org/10.3233/IFS-2011-0484

N. Ghadiri, A. Baraani, N. Ghasem-Aghaee, and M.A. Nematbakhsh, A Human-Centric Approach To Group-Based Context-Awareness, International Journal of Network Security and its Applications 3 (2011), 47-66. http://dx.doi.org/10.5121/ijnsa.2011.3104
 
Selected conference papers :
N Ghadiri, A Ghadiri, and A Sheikholeslami, 2021, August. A Fuzzy Deep Learning Approach to Health-Related Text Classification. In International Conference on Intelligent and Fuzzy Systems (pp. 179-186). Springer, Cham. Link
M Khodizadeh-Nahari,  N Ghadiri, and A Ghadiri, 2021, August. Fuzzy Spatio-Temporal Data Analysis on Disease Outbreaks and Air Transportation. In International Conference on Intelligent and Fuzzy Systems (pp. 937-944). Springer, Cham. Link
S Samiei, M Joodaki and N Ghadiri. "A scalable pattern mining method using Apache Spark platform" 7th International Conference on Web Research (ICWR2021) IEEE, Tehran, 2021 Link
S Davari, and N Ghadiri. "Fuzzy Region Connection Calculus and Its Application in Fuzzy Spatial Skyline Queries." Intelligent Computing-Proceedings of the Computing Conference. Springer, Cham, 2019. Link
M Asadi, N Ghadiri, MA Nikbakht, A Scalable Method for One-mode Projection of Bipartite Networks based on Hadoop platform , ICCKE2018
SH Aboutorabi, N Ghadiri, MK Nahari, A Novel Approach for Approximate Spatio-Textual Skyline Queries, ISDA2017 https://link.springer.com/chapter/10.1007/978-3-319-76348-4_65
M Joodaki, N Ghadiri, AH Atashkar; Protein Complex Detection from PPI Networks on Apache Spark; 9th International Conference on Information and Knowledge Technology (IKT2017)

M Khodizadeh Nahari, N Ghadiri, Z Jafarifard, A Baraani Dastjerdi, JR Sack; A Framework for Linked Data Fusion and Quality Assessment, 3rd International Conference on Web Research (ICWR2017), http://ieeexplore.ieee.org/document/7959307/ - best paper award
AH Atashkar, N Ghadiri, M Joodaki; Linked Data Partitioning for RDF Processing on Apache Spark; ICWR2017, http://ieeexplore.ieee.org/document/7959308/
E Farhangi, N Ghadiri, M Asadi, MA Nikbakht, S Pitre; Fast and Scalable Protein Motif Sequence Clustering Based On Hadoop Framework; ICWR2017, http://ieeexplore.ieee.org/document/7959300/
E Farhangi Maleki, M Nasr Azadani, N Ghadiri, Performance Evaluation of SpatialHadoop for Big Web Mapping Data, ICWR2016, http://ieeexplore.ieee.org/document/7498447/
SM Aboutorabi, M Rezapour, M Moradi, N Ghadiri, Performance evaluation of SQL and MongoDB databases for big e-commerce data, CSSE2015, http://ieeexplore.ieee.org/document/7369245/

S. Davari, N. Ghadiri, Spatial database implementation of fuzzy region connection calculus for analysing the relationship of diseases, ICEE2015, http://ieeexplore.ieee.org/document/7146310/

A. Ghadiri and N. Ghadiri, An Adaptive Hybrid Architecture for Intrusion Detection Based on Fuzzy Clustering and RBF Neural Networks, in: Communication Networks and Services Research Conference (CNSR), 2011 Ninth Annual, 2011, pp. 123-129.

Published by IEEE eXplore, http://dx.doi.org/10.1109/CNSR.2011.26

N. Ghadiri, A. Baraani-Dastjerdi, N. Ghasem-Aghaee, and M.A. Nematbakhsh, Geometrically-enhanced group-based mobile queries with uncertainty, in: Telecommunications (IST), 2010 5th International Symposium on, pp. 95-100. Published by IEEE eXplore, http://dx.doi.org/10.1109/ISTEL.2010.5734005

N. Ghadiri, M.A. Nematbakhsh, A. Baraani-Dastjerdi, and N. Ghasem-Aghaee, A Context-Aware Service Discovery Framework Based on Human Needs Model, in: Service-Oriented Computing – ICSOC 2007, pp. 404-409. Published by Springer LNCS, http://dx.doi.org/10.1007/978-3-540-74974-5_35
 
Selected book chapters :
ML Shahreza, N. Ghadiri, JR Green (2019). Heter-LP: A Heterogeneous Label Propagation Method for Drug Repositioning. In Computational Methods for Drug Repurposing (pp. 291-316). Humana Press, New York, NY.
 

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